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NEWSLETTER 2007 | |
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| October, 2007 |
| Research Institute for Bioresources Okayama University | ||
| Research Institute for Bioresources, Okayama University Chuo 2-20-1, Kurashiki 710-0046, JAPAN TEL:+81-86-424-1661 FAX:+81-86-434-1249 http://www.rib.okayama-u.ac.jp/ |
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| Copyright: Committee of public announcing of RIB | ||
| Contents | |
| History of our institute | |
| Messages from visiting professors | |
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Year |
Name |
Country |
Affiliation |
Host group |
Term |
| 2005 | Sodmergen | China | Professor of Graduate School of Life Sciences, Peking University | Group of Genetic Resources and Functions | July.1 2005- Oct.31 2005 |
| Talbart Paul Brian | USA | Howard Hughes Medical Institute Fred Hutchinson Cancer Research Center | Group of Nuclear Genomics | Nov.1 2005- Mar.31 2006 |
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| 2006 | Datnoff Lawrence Elliott | USA | UFRF Professor of Plant Pathology, Institute of Food and Agricultural Sciences, Department of Plant Pathology | Group of physiology and molecular biology of plant stress responses | May.1 2006- July.15 2006 |
| Zhao Fangjie | United Kingdom | Principal Research Scientist of Agriculture and Environment Division, Rothamsted Research | Group of physiology and molecular biology of plant stress responses | Sep.1 2006- Oct.31 2006 |
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| CHUNG GAP CHAE | South Korea | Professor and Director, Agricultural Plant Stress Research Center, Division of Plant Biotechnology, College of Agriculture and Life Sciences, Chonnam National University | Group of Molecular and Functional Plant Biology | Nov.20 2006- Mar.19 2007 |
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| 2007 | Qian Qian | China | Professor, China National Rice Research Institute | Group of Crop Genome Modification | Apr.14 2007- Sep.30 2007 |
| § History of our institute § |
![]() The Institute was founded in 1914 as the "Oohara Institute for Agricultural Research" by Magosaburo Oohara, a leading citizen of Kurashiki City, with the purpose of advancing agricultural sciences. After the Second World War, the Institute became affiliated with the School of Agricultural Science of Okayama University founded in 1951, and became the"Institute for Agricultural Biology"under the direct supervision of the University in 1953. Initially, five research divisions were organized; Applied Entomology, Biochemistry, Plant Genetics, Plant Pathology and Plant Physiology. Later new divisions were added, Micrometeorology in 1960, Biological Water Quality in 1966 (the name of this division was changed to Water Quality in 1975), Weed Science in 1970 and the Barley Germplasm Center in 1979. The Institute has carried out research on bioresources from an array of viewpoints for 70 years. The English name of the Institute was officially changed to the "Institute for Agricultural and Biological Sciences, Okayama University" in 1970. In order to meet the new scientific and social demands, the Institute was reorganized and renamed" The Research Institute for Bioresources, Okayama University" in 1988. The new Institute was composed of three divisions including nine laboratories, a division for a Foreign Visiting Professor and the Barley Germplasm Center. The last division and the center were unified to establish the Barley and Wild Plant Resource Center i n 1997. Again this institute was reorganized in 2003. The new organization
is composed of the Division of Functional Biology and Genetics, the Division
of Environmental Response Analysis, and the Barley and Wild Plant Resource
Center. In 2004, Okayama University along with a number of other Universities
were restructured and realigned under the National University Corporation
system.This institute contributes to the education of students in the Graduate School of Natural Science and Technology and Graduate School of Environmental Science (Master's and Doctor's Degree Course of Okayama University). |
| Rice field (Aug. 3, 2006) |
| § Messages from visiting professors § |
| Impressions by Dr. Sodmergen 4ヶ月間を振りかえって
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| Personal Impressions as a Visiting Researcher at the Research Institute
for Bioresources, Okayama University by Dr. Paul Talbert Kurashiki, March 28, 2006
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| Impressions of the Institute for Bioresources at Okayama University by Dr. Lawrence E. Datnoff
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| Impressions of the Institute of Bioresources at Okayama University by Dr. Fangjie Zhao
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| Scientific career really began in Kurashiki by Dr. Gap Chae Chung Twenty years ago in 1987, I could have chosen my post-doc position offered from England. Instead, I somehow arrived at Okayama airport to meet Professor Matsumoto and his wife. From such decision to stay in Kurashiki, the directions of many people’s life in my Institute have been changed. After the completion of master degree in Chonnam National University, Korea, I flew to New Zealand to study horticulture in Lincoln University and the topic was on the dry matter partitioning in cucumber plant when influenced by environmental stresses. I was rather horticulturist, not a plant physiologist and hence the biochemical works that Professor Matsumoto was doing at that time were new topics. The only common thing in our research interests between Prof. Matsumoto and me at that time was on the nutrition of cucumber, particularly the calcium nutrition. From one year staying in the lab, we were able to publish 3 papers on the effect of NaCl on the ATPase activity in root membrane of cucumber and barley plants. One paper published in 1988 regarding the activity of tonoplast ATPase activity of barley root when influenced by NaCl is still citing by the research scientists throughout world, implying the quality of work implemented in this Institute. After returning home, I was able to find research fund based on the papers published with Prof. Matsumoto and to establish my lab to work on the effect of low temperature on the performance of cucumber plasma membrane ATPase activity, a training that was done in this Institute. From then on, so called “Agricultural Plant Stress Research Center” was established in our University. The Center is financially supported by the Ministry of Science and Technology for 9 years. I have been honored by the invitation of this Institute twenty years later of my first arrival to Kurashiki in 1987 and, therefore, felt like I was home all the time. Water transport protein, aquaporins, has been a common title this time with Dr. Katsuhara and his group. A turning point was that low temperature induced water stress at least in the beginning, a common phenomenon that could be seen also by salt stress, a research topic covered by Dr. Katsuhara in this Institute. During my stay, we have been able to find very good reasons why we should continue to cooperate in the future until my retirement after 5 years. We need considerable effort to make firm conclusions on the mechanism involved in salt sensitivity or tolerance in barley varieties but we feel that we are making already some progress. In addition to aquaporin business, we also shared common interest in hydrogen peroxide transport through aquaporins, a topic that has not been covered by scientists very much until now. Before leaving the city of Kurashiki, I would like to express sincere thanks to Professor Takeda, Dr. Shibasaka and other members in Dr. Katsuhara’s lab. In addition, all the staff members who visited our Center in Korea have been very helpful during my stay. Hopefully, I will be able to visit again twenty years later! (Professor and Director, Agricultural Plant Stress Research Center, Division of Plant Biotechnology, College of Agriculture and Life Sciences, Chonnam National University, Gwangju 500-757, Korea) |
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by Dr. Qian Qian First, I would like to express my deepest gratitude to Professor Maekawa
and the Research Institute for Bioresources, Okayama University for inviting
me as a Visit Professor, which made me spend an unforgettable half year
from 18th Apr to 30th Sep2007 here.Through participating the research, I have learned more about the mechanism of nDart transposon, which Professor Maekawa developed in past 20 years, and realized that it is a highly efficient system for mutation and gene cloning in rice. Moreover, this system can be used to clone QTLs for important agronomic traits. The broad utility of nDart will accelerate the research on rice genetics. After discussion with Maekawa Sensi, we initiated together to transfer nDart transposon into the indica variety "93-11". The important QTLs in "93-11" will be cloned based on the nDart tranposon mutant population. This exciting work will facilitate the whole genome molecular breeding in rice. What let me very happy is that my application for a major International Cooperation Project from China National Science Foundation has been granted resulting from the collaborating with Maekawa Sensi. The Research Institute for Bioresources, Okayama University is an important international institute with long history, very good facilities, service systems, and diligent and serious-minded scientists. I knew the studies on barley germplasm resources in this institute even when I was a student. I hope scientists in this field will reinforce the collaboration and keep advanced status in this field in the world. As I know, only in China, a lot of colleagues who have visited and studied in this institute have been outstanding scientists. To this institute, they are also precious treasures. I hope this institute will provide more grant to talented students abroad. At last I would like to say that all colleges here are always welcome in Hangzhou, China . Please feel free to contact me when you want to visit China. Thank you! Qian Qian (China National Rice Research Institute) |
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| § Topics at RIB § |
Message from Emeritus Professor Toshihiko Maitani on the occasion of his
retirement After having retired from Okayama University on March 31, 2007, I am now
Emeritus Professor and I mainly live in my home town (Mitoyo city) of Kagawa
Prefecture, working in the fields on fine days and reading books on rainy
days. In 1971, I came to this Institute from Kyoto University to work as
a research associate of the Laboratory of Micrometeorology. At that time,
Dr. Kenichi Takasu was the Professor, Dr. Takuro Seo was the Associate
Professor and Dr. Kazuyoshi Kimura was another research associate. My first
research topic here was on micrometeorology in crop fields. In the 1970s,
experimental data on basic turbulence statistics was still insufficient.
My major research on this topic was to understand the turbulence structure
in crop fields, using several sonic anemometer thermometers. A series of
experiments were made over some plant canopies such as wheat, rush and
rice from 1974 to 1977. The acquisition and analysis of the observational
data were made by an offline data acquisition system for micrometeorological
observation. The observational results were generally consistent with the
results obtained by other investigators over plant canopies, but we found
some peculiar phenomena such as downward turbulent energy flux. I studied
Honami phenomena and mechanism of downward flux of turbulent kinetic energy
in the surface layer near plant canopies. I also conducted experiments
on a wheat field and a rush field, in order to investigate the interaction
between vegetation and surface winds. In the 1970s-1980s , turbulent transport
processes of many quantities such as momentum, sensible heat, water vapor,
vorticity and carbon dioxide were studied just above plant canopies and
sometimes within plant canopies. In the 1990s and 2000s, our research topics
shifted to studies on plant response to meteorological stresses such as
drought and high temperature. In order to protect and preserve each ecosystem
or wild plants, we also made meteorological observations in Rasyomon doline,
Shimotaisyaku valley,and Miyoshi basin in Chugoku districts. We continued
measurement of suspended particulate matter (SPM) for more than 20 years,
using the Andersen Instruments eight stage, multi-orifice sampler. The
relationship between dust storm activities in the north of China and yellow
sands phenomena or SPM concentration in Okayama was investigated. Throughout
my whole research period, we made many experiments with many researchers
in Japan and several foreign countries (USA, Canada, China and Australia).
Especially, as foreign Prof. Roger Shaw and Prof. Jiemin Wang collaborated
with us as foreign visiting professors for a long time. Finally, I would
like to express my sincere thanks to all staff members, students and collaborators
for their kindness and friendship. I wish for the successful future development
of the Institute. Yours sincerely, Toshihiko Maitani. (Emeritus Professor Toshihiko Maitani. August 2007) |
| § Research activities at RIB § | ||
| Congratulations on awards 2005 Professor J. F. Ma: Japan Academy Medal. 2005 " Studies on Tolerance Mechamisms of Mineral Stresses in Higher Plants" Professor J. F. Ma: JSPS Prize. 2005 " Studies on Tolerance Mechamisms of Mineral Stresses in Higher Plants" 2007 Professor J. F. Ma: The 52th Japanese Society of Soil Science and Plant Nutrition Awards for 2007 “Studies on Beneficial Effects and Uptake System of Silicon in Rice” |
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| Symposia Held The 22nd RIB International Symposium “RNA silencing: Principles and practice” This symposium was held on November 18, 2005 at the Okayama University 50th Anniversary Hall. Eight scientists presented their recent topics on basic and applicable work, and then held a discussion with the other participants. |
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| Topics; “Introduction to RNA silencing” Hideki Kondo, Okayama University (Japan) “Molecular and genetic dissection of RNA silencing machineries” Carlo Cogoni, Universita degli Studi di Roma (Italy) “RNA-directed DNA methylation” Michael Wassenegger, AlPlanta-Institute for Plant Research (Germany) “RNA silencing suppressors of animal and plant viruses” Shou-Wei Ding, University of California, Riverside (USA) “Maturation process and function of microRNA in plants” Yuichiro Watanabe, University of Tokyo (Japan)) “RNA silencing-mediated resistance against Beet necrotic yellow vein virus” Tetsuo Tamada, Okayama University (Japan) “RNA silencing technology in crop science” Min-Bo Wang, CSIRO Plant Industry (Australia) Organizer; Prof. Nobuhiro Suzuki |
Drooping cherry blossoms of our institute (Apr.5, 2007) |
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| This symposium was supported financially by the Ohara Foundation for Agricultural Sciences. | ||
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| The 23nd RIB Symposium "Global Warming and Building Greening" This symposium was held on December 2, 2006 at the Kurashiki City Geibunkan Ai-theater. We overviewed the role, a social meaning, the current state, and the perspective of greening on the rooftop, the building, and the artificial ground in this symposium, including the relation between Global warming and the heat island phenomenon. It aims at the problem institution, the overall discussion and understanding. Topics; “ From rooftop greening to the greening construction - Perspective of greening business and study –“ Mitsuo Kondo (Tokyo University of Agriculture, Faculty of Regional Environment Science) “ The present situations and mechanism of city warming” Fumiaki Fujibe (Japan Meteorological Agency, Meteorological Research Institute) “School eco-repair and environmental education” Yashuyuki Ozaki (Ministry of the Environment, Environmental Policy Bureau) “Approach of rooftop greening in Shimane University with aquatic eco-systems” Morihiro Aizaki (Shimane University, Faculty of Life and Environmental Science) “Technology of rooftop greening using symbiotic microorganisms” Toshihiro Kurusu (The General Environmental Technos Co Ltd) ”Development of materials of greening in rooftop” Kazunori Fujii (Minoru Industrial Co., Ltd) ”Outline and progress report of greening project in RIB” Toshihiko Maitani (Okayama University, RIB) Organizer; RIB greening project team (RIB Okayama University) This symposium was supported financially by the Ohara Foundation for Agricultural Sciences. |
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| International Workshop on COE Program of Okayama Univercity October 2, 2006, Okayama University 50th Anniversary Hall Title: Construction of Monitoring Systems for Global Environment by Bioresources and their Application for Environmental Safeguard Organizers: Kazuhide Kimbara (Okayama University, RIB) 1. Research progress of the COE project Project members (RIB, Okayama University) 2. Detection and assessment of physiological activity of bacteria in soil Kazuhide Kimbara (RIB, Okayama University) 3. Genomic insights into the potent pollutant-degrading abilities of a soil bacterium Lindsay Eltis (Professor, University of British Columbia) 4. Monitoring the trends of organic and inorganic contaminants using Rothamsted long-term experiments Fangjie Zhao (Principal Research Scientist, Rothamsted Research)) 5. Molecular markers from wolf spider for the risk assessment of heavy metal exposure Si Hyeock Lee (Associate Professor, Seoul National University) |
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| The Symposia in the 47th Annual Meeting of the Japanese Society of Plant
Physiologist March 19th, 2006, Tsukuba University Title: Functions of Barley Genome: from Genes, Plants to Beer Organizers: Maki Katsuhara, Kazuhiro Sato (Okayama University, RIB) 1. Development and application of genome resources Kazuhiro Sato (Research Institute for Bioresources, Okayama University) 2. Positional cloning systems in barley Takao Komatsuda (National Institute of Agrobiological Sciences) 3. Toward improving fusarium head blight resistance Kiyosumi Hori (Research Institute for Bioresources, Okayama University) 4. Regulation of barley gene expression under water-related stresses Maki Katsuhara, Manabu Sugimoto (Research Institute for Bioresources, Okayama University) 5. Characterization of barley enzymes involved in the lipid oxidation and the flavor stability of beer. Hisao Kuroda (Frontier Laboratories of Value Creation, SAPPORO BREWERIES LTD.) 6. Tolerance mechanisms of mineral stress in barley Jian Feng Ma (Research Institute for Bioresources, Okayama University) |
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| Symposium on “Microorganisms Living in the Underground World’ At 2006 Annual Meeting of Japan Society for Bioscience, Biotechnology, and Agrochemistry (Kyoto Women’s University) on March 28, 2006 Organizer: Fusako Kawai (RIB, Okayama University), Furukawa (Kyushu University) 1. Microorganisms involved in formation of soil spheres Kazuyuki Inubushi (Fac. Horticulture, Chiba Univ., Japan) 2. Microorganisms supporting plants in rihizospheres Tatsuhiro Ezawa (Grad. Sch. Agr., Hokkaido Univ., Japan) 3. Microorganisms tolerant to low pH and high Al concentrations Fusako Kawai, Akio Tani and Yoriko Shimizu (Res. Inst. Biores., Okayama Univ., Japan) 4. Investigation of lifestyle of bacteria in soil Yumi Shimomura1, Rhyzo Ohno1 and Kazuhide Kimbara2 (1Tkyo Inst. Tech. and 2Okayama Univ., Japan) 5. Bacteria involved in chloroethene respiration in the environment Masatoshi Goto, Yasumoto Futakami and Kensuke Furukawa (Grad. Sch. Agr., Kyushu Univ., Japan) 6. Newest microbial features in the lithosphere Ken Takai (JAMSTEC, Japan) |
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| Workshop on Silicon in Plants At Kurashiki Gebunkan Hall on May 25th, 2006 Organizer: Jian Feng MA (RIB, Okayama University) 1.Datnoff, L. (Univ. Florida) The effect of silicon on components of host plant resistance 2. Rodrigues, F. (Vicosa Fed. Univ.) Silicon-mediated resistance in monocots: the rice-Magnaporthe grisea model 3. Kanto, T. (Hyogo Pref. Tech. Center Agri.) Effect of soluble silicon on the plant-microbe interaction (strawberry and powdery mildew fungus) 4. Iwasaki, K. (Kochi Univ.) Effect of silicon fertilization on the production of nasunin, an anthocyanin in eggplant peels 5. Hattori, T. (Tottori Uni.) Effect of silicon application on water relation of sorghum under osmotic stress 6. Kinrade, S. (Lakehead Univ.) Effect of silicon on primary cell wall structure 7.Yokoyama, T. (Kyushu Univ.) Specific concentration and deposition of silicic acid in rice plant 8. Kindomihou, V. (Abomey Calavi Uiv.) Relationships between silica concentration and other leaf traits in tropical fodder grass species 8. Abe, J. (Univ. Tokyo) Silicon deposition in leaf and root of four forage grass species 9. Belanger, R. (Univ. Laval) Can transcriptome analysis explain the role of silicon in plant biology? 10. Tamai, K. (Okayama Univ.) Isolation and characterization of a rice mutant with low Si and cloning of the responsible gene 11. Yamaji, N. (Okayama Univ.) Spatial distribution and temporal variation of rice Si transporter Lsi1 12. Mitani, N. (Okayama Univ.) Functional analysis of rice silicon transporter Lsi1 13. Fujiwara, T. (Univ. Tokyo) Boron transporters: their regulation and application for growth improvement |
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| ICEM2006 in Yamaguchi “Management of Sustainability and Ecological Modeling” At Faculty of Medicine, University of Yamaguchi, Ube, Yamaguchi, Japan Conference Chair: Masao Ukita (Yamaguchi University, Japan) International Advisory Committee: Isao Aoyama (Okayama University, Japan) etc. 1. Organized Sessions 2. Modelling for ecosystem management Use of ecological modelling as a tool for managing ecosystem 3. Ecological modelling techniques Presentation of new techniques in ecological modeling 4. Modelling growth and development processes in ecosystems Use of ecological modelling as a tool for understanding ecosystem 5. Modelling different types of ecosystems Application of ecological models to various types of ecosystems, such as forest ecosystems, aquatic ecosystems, grassland ecosystems, agricultural ecosystems, etc. 6. Modelling catastrophic changes in the environment: Models concerning the spread of invasive species, extinction, eco-toxicology, outbreaks etc. 7. Other topics related to ecological modelling |
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| Symposium on “Comprehensive Analyses of Microbial Strategy and Evolution
for Biodegradation of Xenobiotic Polymers Based on Polymer Science, Microbiology
and Mathematics” At 58th Annual Meeting of The Society for Biotechnology, Japan (Osaka Univ.) on September 13, 2006 Organizer: F. Kawai (RIB, Okayama University), Yutaka Tokiwa (AIST) 1. Controlling of biodegradability for microbial polyesters T. Iwata (Polymer Chem. Lab., RIKEN, Japan) 2. Crystal structure of a fungal PHB depolymerase T. Hisano (Spring-8 Center, RIKEN Harima Inst., Japan) 3. Biodegradation of plastics and microbial diversity in soil environment-new degrading genes and their applications T. Nakajima (Grad. Sch. Life Env. Sci., Univ. Tsukuba, Japan) 4. Biodegradable plastic-degrading microorganisms and natural polymers Yutaka Tokiwa (AIST, Japan) 5. Purification, characterization, gene cloning and molecular characterization of extracellular poly(L-lactic acid) depolymerases from Amycolatopsis sp. strain K104-1 N. Abe, H. Tamakawa, E. Matsuda and Y. Kamio (Grad. Sch. Agric. Sci., Tohoku Univ., Japan) 6. Conservation and transcriptional regulation of polyethylene glycl-degradative operon In Sphingomonads A.Tani, J. Charoenpanich, K. Kimbara and F. Kawai (Res. Inst. Biores., Okayama Univ., Japan) 7. Studies on mathematical models for depolymerization of polymers and their applicabilit Y. Watanabe and F. Kawai (Grad. Sch. Environ. Sci., Res. Inst. Biores., Okayama Univ., Japan) |
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| Okayama ESD International Conference 2006 “Towards realizing a sustainable
society” At Okayama University 50th Anniversary Hall and Graduate school of natural sciences building conference room (Okayama City) on October 12th-15th, 2006 Conference Chair: Isao Aoyama (Okayama University) 1. Opening Okayama Univerisity, Okayama city and UNESCO 2. Education for International Understanding Chair: Toru Okigaki (The Okayama Prefectural International Exchange Foundation) 3. Education and Disaster Preparedness Chair: Hideki Yamamoto, Kenji Okubo (Okayama University) 4. Environmental Education Chair: Yusaku Nogami (Okayama University of Science) 5. RCE conference Chair: Katsunori Suzuki (United Nations University Institute of Advanced Studies) 6. Plenary Lecures Hans van Ginkel (the Rector of the United Nations University) 7. Panel Discussion Chair: Isao Aoyama |
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| The 49th Symposium of Japanese Society of Breeding “Triticeae Breeding
– Prospects and Problems” At Yamagata University on September 22, 2007 Organizers: Taihachi Kawahara (Kyoto University), Kazuhiro Sato (Okayama University) |
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| 1. Prospects of barley breeding with DNA markers K. Sato (RIB, Okayama University) 2. Evolutional process at domestication genes in barley T. Komatsuda (National Institute of Agrobiological Sciences) 3. Classification and phylogeny of wheat and its relatives T. Kawahara (Grad. School Agric., Kyoto University) 4. Interspecific variation of a wild progenitor, Aegilops tauschii, and its application to wheat breeding S. Takumi (Grad. School Agric., Kobe University) 5. Potential for wide hybridization in wheat using Triticeae genepool H. Tsujimoto (Fac. Agr., Tottori University) |
Barley field covered with snow (Feb.6, 2006) |
| § Welcome and farewell § |
| Welcome |
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Year |
Name |
Group |
Term |
| 2006 | Jun Yamashita (Assistant Prof.) | Group of Barley and Wild Plant Resources | Apr. 1 2006- |
| Naoki Yamaji (Assistant Prof.) | Group of Physiology and Molecular Biology of Plant Stress Responses | Sep. 1 2006- |
| Farewell |
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Year |
Name |
Group |
Term |
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2006 |
Masayoshi ASATANI (Assistant Prof.) |
Group of Plant-Microbe Interactions |
-Mar. 31 2006
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2007 |
Toshihiko MAITANI (Prof.) |
Group of Meteorological Ecology |
-Mar. 31 2007 |
| Tetsuo TAMADA (Prof.) | Group of Plant-Microbe Interactions | -Mar. 31 2007 |
| § About our foundation § |
| The Ohara Foundation for Agricultural Science chaired by Mr. Ken-ichiro Ohara acts support our institute financially and contributes to the advancement of agricultural science. The activity of the foundation is to assist our research projects, sponsor our symposium and publications including this newsletter, and support mutual research exchange programs abroad. We are grateful to it. |
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| Night view of Kurashiki Bikan-Chiku (Mar.21, 2006) |
| Newsletter of 2005 |
| NewsLetter of 2005 |
| NewsLetter of 2005(PDFversion) |