NEWSLETTER 2007 
  
   October, 2007  
  Research Institute for Bioresources Okayama University  
  Research Institute for Bioresources, Okayama University
Chuo 2-20-1, Kurashiki 710-0046, JAPAN
TEL:+81-86-424-1661
FAX:+81-86-434-1249
http://www.rib.okayama-u.ac.jp/
 
  Copyright: Committee of public announcing of RIB
 
 
 
 Contents
History of our institute  
Messages from visiting professors  

Year

Name

Country

Affiliation

Host group

Term

2005 Sodmergen China Professor of Graduate School of Life Sciences, Peking University Group of Genetic Resources and Functions July.1 2005- Oct.31 2005
Talbart Paul Brian USA Howard Hughes Medical Institute Fred Hutchinson Cancer Research Center Group of Nuclear Genomics Nov.1 2005-
Mar.31 2006
2006 Datnoff Lawrence Elliott USA UFRF Professor of Plant Pathology, Institute of Food and Agricultural Sciences, Department of Plant Pathology Group of physiology and molecular biology of plant stress responses May.1 2006-
July.15 2006
Zhao Fangjie United Kingdom Principal Research Scientist of Agriculture and Environment Division, Rothamsted Research Group of physiology and molecular biology of plant stress responses Sep.1 2006-
Oct.31 2006
CHUNG GAP CHAE South Korea Professor and Director, Agricultural Plant Stress Research Center, Division of Plant Biotechnology, College of Agriculture and Life Sciences, Chonnam National University Group of Molecular and Functional Plant Biology Nov.20 2006-
Mar.19 2007
 2007  Qian Qian  China Professor, China National Rice Research Institute Group of Crop Genome Modification Apr.14 2007-
Sep.30 2007
Topics at RIB
   Message from Emeritus Professor Toshihiko Maitani on the occasion of his retirement
 (Emeritus Professor Toshihiko Maitani, August 2007)
Research activities at RIB  
   Congratulations on awards
   Symposia Held
Welcome and farewell 
About our foundation
 
 
Newsletter 2007 PDF version download
 
 
 § History of our institute §
 
The Institute was founded in 1914 as the "Oohara Institute for Agricultural Research" by Magosaburo Oohara, a leading citizen of Kurashiki City, with the purpose of advancing agricultural sciences.

After the Second World War, the Institute became affiliated with the School of Agricultural Science of Okayama University founded in 1951, and became the"Institute for Agricultural Biology"under the direct supervision of the University in 1953. Initially, five research divisions were organized; Applied Entomology, Biochemistry, Plant Genetics, Plant Pathology and Plant Physiology. Later new divisions were added, Micrometeorology in 1960, Biological Water Quality in 1966 (the name of this division was changed to Water Quality in 1975), Weed Science in 1970 and the Barley Germplasm Center in 1979.

The Institute has carried out research on bioresources from an array of viewpoints for 70 years. The English name of the Institute was officially changed to the "Institute for Agricultural and Biological Sciences, Okayama University" in 1970.

In order to meet the new scientific and social demands, the Institute was reorganized and renamed" The Research Institute for Bioresources, Okayama University" in 1988. The new Institute was composed of three divisions including nine laboratories, a division for a Foreign Visiting Professor and the Barley Germplasm Center. The last division and the center were unified to establish the Barley and Wild Plant Resource Center in 1997. Again this institute was reorganized in 2003. The new organization is composed of the Division of Functional Biology and Genetics, the Division of Environmental Response Analysis, and the Barley and Wild Plant Resource Center. In 2004, Okayama University along with a number of other Universities were restructured and realigned under the National University Corporation system.

This institute contributes to the education of students in the Graduate School of Natural Science and Technology and Graduate School of Environmental Science (Master's and Doctor's Degree Course of Okayama University)
.

 Rice field (Aug. 3, 2006)
 
§ Messages from visiting professors § 
Impressions by Dr. Sodmergen
4ヶ月間を振りかえって

私は坂本亘教授との共同研究のため、毎年、岡山大学資源生物科学研究所にお邪魔していますが、それも今年で十年目となりました。そのために研究所の先生や学生に数多くの知り合いができ、一年ぶりに会うと“また来ましたね”と挨拶されます。しかし、今年はいつもと少し違い、7月1日から10月31日までという4ヶ月の長い期間を外国人特別研究員(客員教授)の身分で滞在することになりました。日々の経つのが早く、あっという間に4ヶ月間が過ぎてしまいました。この4ヶ月間を振りかえって見ますと、私は研究所における研究の進展や最近の改組の成果を学び、数多くの先生と科学研究及び研究費のあり方、それに具体的な研究内容や方法についても議論することができました。これらのことを通じて、私は資生研に新たな活気を感じ、自分の今後の大きな励ましにもなりました。長くて短い4ヶ月間でしたが、私にとって大変有意義な時間でした。
 まず、今回の研究所訪問で初めて知ったのが“ジャーナルクラブ”という勉強会でした。若い研究者を中心としたグループが新しい或いは面白い論文を積極的に読んで白熱的に議論することは皆さんの研究への熱意を反映しているように思います。また、皆さんと話をすると、各自の業績(論文)や研究費の申請への真剣さも以前になかった強いものになっています。このような動向は、近年、資生研で進められてきた「改革」によるものだろうと思いました。従来この研究所で多くの先生方々が築き上げた特徴のある素晴らしい研究に加え、最近持たらされた若手の活気が、いっそう資生研を日本及び世界で競争力のある研究機関に持ち上げるだろうと感じました。中国の主な大学でも、最近、競争を研究に導入しています。そのやり方は日本と似たようなところもありますので、今後、資生研の経験を参考にしたいと思います。
 以前から資生研へ来るたびに、私はここの図書館を利用しました。中国で見つからなかった学術誌や忙しくて読み損ねた論文をここの図書館からコピーし、または図書館を通じて取り寄せて読みます。中国では図書館と図書館の間のネットワークがまだ確立されていません。このため、大学の図書館にない学術誌を読む場合、自ら科学院あるいは市の図書館へ足を運ばなければなりません。行き来に時間がかかりますので、ついに多くの重要な論文を読み損ねることになります。私はこの問題を資生研の図書館では解決することができました。近年、岡山大学の電子ジャーナルは大変に豊富になり、また日本全国からの論文(ハードコピー)の取り寄せも早くて便利なので、私は今回も沢山の論文をダンロードしたり取り寄せてもらったりして読みました。本国の大学を離れれば、日常の雑用からも解放されますので、ゆっくりと考えながら読むことが出来ました。研究者に時々ゆっくりと論文を読むことは大事な“充電”だと思っています。今回の4ヶ月間の充電により私はいくつか重要な研究案に思いつき、国に帰ったらさっそく実験を始めようと思います。
 交流と充電のほかに、私は今回、資生研で具体的な研究活動に加わることも出来ました。シロイヌナズナの花粉に関する突然変異体の解析は、これまで坂本亘教授と行っている共同研究の一つですが、今回は松島良助手も一緒に、この解析を引き続き進めました。実験に用いた材料は花粉の栄養細胞にオルガネラDNAが沢山残る変異体で、私が協力したのはDNAを残すオルガネラの同定などです。簡単そうに思われる実験ですが、胞子に当たる花粉の電顕観察は従来から難しいものだと知られ、今回も苦戦しました。幸いに多くの手法を試した結果、最後に納得の行く電顕像が得られ、DNAを残すオルガネラはミトコンドリアではなく、プラスチドであることが分かりました。このことは遺伝子の機能を理解するために重要な結果で、続く解析に役立つでしょう。また、今回私達が見いだした花粉の観察法により、非常に鮮明にオルガネラを観察することがわかったので、新たな手法として確立したいと思います。
 資生研で坂本さんと実験をしているとき、以前から感心して学んだことの一つとして共通機器の管理と使用とがあります。高価で重要な設備を共同で購入して使用することは効率的だと中国でも思われています。しかし、中国の大学では共通で使用することより研究室による管理が強調され、誰でも24時間使える態勢とせず、ついに管理する研究室のものになってしまうケースがほとんどです。私は2年前に電子顕微鏡の管理を任され、このとき、資生研のやり方を導入しました。その結果、今では電顕室が開放され、誰もがいつでも気軽に利用できるものになっています。資生研では共通機器の使用に問題がなく、とても素晴らしいと思います。この上にメンテナンスの費用や機器の場所などをさらに合理化して確保すれば、共通機器がよりよい効率で皆さんの研究に役立つでしょう。
 私は今回、おもに電子顕微鏡を使った実験を坂本さん、松島さんとしました。2年前と比べれば電顕室とその暗室がかなり狭くなっています。原因の一つは資生研に電顕の使用者が少ないからでしょう。記録を見ても、使ったのは私ともう一人の先生ぐらいで、ほとんど機械が稼動していないことも事実です。確かに世界的に電顕に頼って仕事をする研究者が一時減りました。しかし、ここ数年、分子生物学の研究においても細胞構造の変化を確かめたデータが求められる傾向になりつつあります。北京大学でも、一時、年間十数時間しか稼動しない電顕が今、使用者が順番待ちをする状態となっています。今回資生研に来る直前に、蛋白質の高次構造を解析している教授から電顕の使用申請があり、予想外だったのでとても驚きました。でも、蛋白質の高次構造も電顕で観察できるのは事実です。今後よりよい結果を出すために、多くの研究分野において電顕が不可欠になるでしょう。利用者の一人として、資生研でも、電顕室をより大事にし、出来れば顕微鏡の更新が近い将来あればと願っています。
 今回資生研で場所が狭くなったと感じたのは電顕室だけではありません。複数の先生から場所が足りないと聞きました。私が実験をしている坂本さんの実験室も面積的にぎりぎりで、松島さんと学生さんの部屋も実験室と一緒で、生物学の実験を行うために必要なドラフトは付けられていません。このため、私は庭に降りて危険物を使う操作をすることもありました。私の勝手な考えですが、これまでの私の観察では、研究所の総面積は決して小さくなく、また、十年前と比べて教官の人数はほとんど変わっていませんので、面積が足りないことには恐らく使用の合理化に余地があるのではないかと思います。北京大学では実験室面積を有料使用とした結果、かなりスペースが空くようになりました。また、徴収された使用料は共通の機器管理などに活用しています。客員教授の身分で、色々提案することは余計なのかもしれませんが、北京大学の経験が資生研に参考になれればと思います。
 以上のように振り替えって見ますと、私は資生研で勉強、交流、充電、実験と大変充実した4ヶ月間を過ごすことができました。今回、客員教授としてこの貴重な機会与えていただいた資生研、そして岡山大学に感謝を申し上げます。また、大変お世話になった先生と学生の方々にお礼を申し上げながら、私の報告とさせていただきます。

2005年10月31日

(北京大学生命科学学院 教授)

(in Japanese)

 ******************************
Personal Impressions as a Visiting Researcher at the Research Institute for Bioresources, Okayama University
by Dr. Paul Talbert


Kurashiki, March 28, 2006

I am very grateful and honored to have received the invitation from Director Takeda and Drs. Murata and Nagaki to spend five months as a visiting researcher at the Research Institute for Bioresources. The RIB has been welcoming and generous in its support, and provided opportunities not only to work with my host lab and interact with other labs at the Institute, but has also aided in hosting the RNAi conference and in supporting my travels to other labs in Japan. This has been a very valuable experience for me, and I hope that I have been able to contribute a small amount in return.

 The project I selected, investigating the conservation of a centromeric histone protein in dinoflagellates, which have been thought to lack histones, has unfortunately proven to be quite intractable because of technical issues. Dr. Murata and Dr. Nagaki have nevertheless generously provided technical suggestions and laboratory resources to aid me. I also received help from Dr. Sakamoto’s lab, and as a result of travel supported by the RIB, from Dr. Andreas Houben, a visiting professor at the University of Kyoto, and from Dr. Kato Koichi at Nagoya City University. As of this writing, Dr. Kato is still trying to help me resolve the technical problems with this project.

 Although my project has not been very fruitful, my visit with Dr. Houben, who is collaborating with Drs. Murata and Nagaki on investigating holocentric chromosomes in Luzula, has led to my being able to contribute a small amount to this collaboration, namely providing an evolutionary analysis of centromeric histones in Luzula species. I have also reviewed manuscripts and participated in discussions of lab research reports and journal clubs. In retrospect, I regret that I did not participate more regularly in journal clubs from the beginning of my stay because I over-estimated the language difficulties. Since the papers are generally in English, I might have been able to contribute more here than I did.

 The RIB is a well-equipped and diverse place. At the beginning of my stay, I wondered numerous times whether the chemicals or equipment necessary for certain experiments were available, and each time I found that they were. I am also impressed by the diversity of topics being studied here, and was pleased to find a breadth of on-line journal subscriptions available. The expertise of researchers here is quite good, as evidenced by the numerous awards they have received.

 It is my general impression that Japanese students are on the whole a bit more shy or quiet than their American counterparts. Because discussion and questioning of data are critical to scientific development, I believe that it is important to encourage students to actively participate in discussions. Since I am not aware of all aspects of student training here, I’m uncertain as to what additional encouragements could be tried, but perhaps occasional student-led poster sessions or discussion groups might encourage greater interaction.

 I am particularly grateful for all the extra work undertaken by Drs. Murata and Nagaki to translate for me and my family. When we struggled with understanding my daughter’s first grade homework, Dr. Nagaki would help to translate, and when we needed a doctor, Dr. Murata accompanied us. Their assistance in these and many other situations made our time here relatively trouble-free.

 The use of the apartment on campus was also very helpful to my family. The apartment is generously sized for a family of three, and the karin in the backyard made excellent jam. It is conveniently located for work, and also for my daughter’s school, Kurashiki Nishi Sho Gakko, where we were extremely fortunate to get a teacher who spoke English and who worked hard to help my daughter feel fully included.

 In addition, the very inexpensive rent for the apartment enabled my family to do a fair amount of traveling in Japan that greatly enriched our experience of Japanese culture. We were able to make several trips to Kyoto, Nara, Himeji, Marugame, Hiroshima, Osaka, and Tokyo, in addition to enjoying the rich offerings of Kurashiki and Okayama. We particularly enjoyed bicycling in Kibi-ji, visiting Miyajima with Dr. Murata, and feeding saru at Arashiyama. We also took advantage of Okayama-ken’s International Villa program for foreign visitors, which enabled us to go bird-watching in Ushimado and hiking on Shiraishi Jima.

 The spirit of international exchange on both cultural and scientific levels has been an invaluable experience. I am deeply grateful to Drs. Murata and Nagaki, my co-workers in their lab, Director Takeda and the staff of the RIB, Okayama University, the teachers of Kurashiki Nishi Sho Gakko, our neighbors, and many other people in Japan for their kind assistance throughout our visit. I look forward to maintaining contact with my Japanese colleagues and hope to be able to visit again in the future.

(Howard Hughes Medical Institute, Fred Hutchinson Cancer Research Center)

 ******************************
Impressions of the Institute for Bioresources at Okayama University
by Dr. Lawrence E. Datnoff

no imageThe experience I had as a visiting professor at the Institute for Bioresources, Okayama University, Kurashiki was highly rewarding on both a professional and personal basis. Professionally, I had the opportunity to work with the leading authority on silicon in plants, Dr. Jian Feng Ma. In fact, I also learned that Dr. Ma is a leading expert in understanding both physiologically and molecularly how plants tolerate Al, Fe and Cd. He has surrounded himself with a great group of hardworking and determined graduate students and postdocs, all whom are helping to further elucidate the above. It was a great pleasure to have the opportunity to learn from them about their individual research projects and to observe their genuine curiosity about the research they were conducting. I also enjoyed seeing how Dr. Ma creates a warm working environment that makes his students and postdoc’s feel like a family.
As I mentioned, Dr. Ma’s lab is leading the world in understanding how silicon functions in plants. His group was the first to demonstrate and characterize silicon transporter genes in rice. His group is currently studying other plant species to determine if silicon transporter genes are present. In addition, Ma’s group knows how to quantify both the insoluble and soluble silicon content of plants. By using his silicon research approaches, Dr. Ma and I were able to better resolve the potential mechanism of how this element is affecting plant disease development. In particular, we used a silicon nutrient culture method to test the hypothesis of whether silicon confers resistance to plant disease (rice/Magnaporthe oryzae pathosystem) via a mechanical barrier (polyermization of Si in plant tissue-insoluble silicon) or through soluble silicon amplifying a plant mediated defense response via the production of enzymes or phytolexins. Preliminary results suggest that perhaps both the insoluble and soluble silicon confer rice blast resistance. We still have some more data to collect such as insoluble and soluble silicon in the leaf tissue and the number of silica bodies formed. In addition, RNA will be extracted from tissue collected 24 and 72 hours after inoculation and will be subjected to microarray analysis using the new rice gene chip. Hopefully, this information might reveal which genes are up or down regulated by silicon during the infection process. Based on all the above, I believe that Dr. Ma and I will have some great information to report in the not too distant future.
While working with Dr. Ma, I also had the opportunity to meet and learn about other outstanding research programs at the institute that included the plant-microbe interaction group, entomology, soil science and remediation, and plant breeding especially with barley. All these programs have state of the art equipment for conducting research. Needless-to-say, all of these units are conducting cutting-edge research, and training many students not only from Japan but from other countries such as China, Greece, Paraguay, Tunsia and Turkey. Interestingly, the institute also focused on presenting their research findings to the general public by having an open house which they do annually. So, this institute does a terrific job of communicating not only to the scientific community but to the community at large.
Personally, I was able to have better than a bird’s eye view on the Japanese culture. The food, customs, language and scenery were all remarkable and fascinating. I enjoyed the wide variety of delicious fish and vegetable dishes, and the exquisite style of food presentation was titillating to the eyes. I truly delighted in the custom of having hot towels provided to clean one’s face and hands before each meal; we need to adopt this method back in the US. The language was fun to learn, and I enjoyed the few phrases that I mastered. In fact, I became so good at greeting people, that one night at one of the yakitori, where I sort of know the owners, I greeted the owner and our exchange went so well that one of her other customers began to talk to me since he thought I could speak Japanese fluently. The landscape also was so picturesque from the rice fields surrounding the farmers’ homes to the rolling hills and mountains to the Shinto Shrines and Buddhist’s Temples, truly a land of the rising sun.

(UFRF Professor of Plant Pathology, Institute of Food and Agricultural Sciences, Department of Plant Pathology, University of Florida)

 ******************************
Impressions of the Institute of Bioresources at Okayama University
by Dr. Fangjie Zhao

It was a great honour for me to be invited as a visiting professor at the Research Institute for Bioresources, Okayama University. Although I spent only a brief period (two months) here at Kurashiki, I thoroughly enjoyed the experience both professionally and personally. Before I came to the Institute, I already had some collaboration with Professor Jian Feng Ma on the research of metal uptake and detoxification in hyperaccumulator plants, with four joint publications over the last two years. This visit served to further strengthen the on-going collaboration. I had numerous discussions with Professor Ma, and benefited greatly from his experience and knowledge, particularly from the molecular physiology aspect. Overall, I am much impressed by the cutting edge research of Professor Ma’s group. They have a great strength in combining the approaches of plant physiology, biochemistry, molecular biology and genetics in plant nutrition and stress research. I am also very impressed by the enthusiasm and hard-working attitude of the postdocs and PhD students in Professor Ma’s group. I participated and enjoyed their regular group meetings, and learnt a great deal from them. The research facilities were also excellent.
Professor Ma is an internationally leading scientist in the research areas of Si and Fe nutrition, and Al tolerance mechanisms in higher plants. While at the Research Institute of Bioresources, I had the opportunity to conduct some experiments to characterise the rice naat1 mutant that has a point mutation in the naat gene. The gene encodes nicotianamine aminotransferase, which is a crucial enzyme in the biosynthesis of phytosiderophores that are important for Fe acquisition in graminaceous plants. The naat1 mutant showed severe symptoms of Fe deficiency when grown in soil under dry land conditions, but was able to grow normally under submerged conditions. This suggests that the mutant was able to take up Fe(II) under reduced conditions, but could not acquire Fe(III) from aerobic soils efficiently. Using the facilities of Professor Ma’s laboratory, we demonstrated that the mutant could not secret any phytosiderophores, unlike the wide type rice that secreted a large amount of 2’-deoxymugineic acid in response to Fe deficiency. This explains the phenotype exhibited by the naat1 mutant grown in an aerobic soil. Surprisingly, the mutation of the naat1 gene led to upregulation of a range of metal transporter genes, which probably explains why the mutant took up significantly more Zn and Cd than the wide type in our experiments. The experiments that I conducted at the Research Institute of Bioresources form a part of a larger project led by Professor Wu Ping of Zhejiang University, China. I am confident that we will be able to produce a good paper together from this project.
During my short stay in Japan, I had the opportunity to attend the annual conference of the Japanese Society of Soil Science and Plant Nutrition in Akita, where I met some old friends and made new friends, and the international workshop on biomonitoring and environmental protection organised by the Research Institute for Bioresources. I enjoyed informal discussions and exchange of ideas with Japanese colleagues in these meetings.
My brief stay in Japan enabled me to have a deeper understanding of the Japanese culture and the way of life. Public transport in Japan is so much better than that in the UK. Everywhere in Japan that I visited, service was always fantastic. I greatly appreciated the friendly atmosphere and peaceful environment in the research institute and the local city Kurashiki, as well as in several cities that I visited. All in all, this visit was a very memorable experience for me.

(Principal Research Scientist, Agriculture and Environment Division, Rothamsted Research
)

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Scientific career really began in Kurashiki
by Dr. Gap Chae Chung


Twenty years ago in 1987, I could have chosen my post-doc position offered from England. Instead, I somehow arrived at Okayama airport to meet Professor Matsumoto and his wife. From such decision to stay in Kurashiki, the directions of many people’s life in my Institute have been changed.
After the completion of master degree in Chonnam National University, Korea, I flew to New Zealand to study horticulture in Lincoln University and the topic was on the dry matter partitioning in cucumber plant when influenced by environmental stresses. I was rather horticulturist, not a plant physiologist and hence the biochemical works that Professor Matsumoto was doing at that time were new topics. The only common thing in our research interests between Prof. Matsumoto and me at that time was on the nutrition of cucumber, particularly the calcium nutrition. From one year staying in the lab, we were able to publish 3 papers on the effect of NaCl on the ATPase activity in root membrane of cucumber and barley plants. One paper published in 1988 regarding the activity of tonoplast ATPase activity of barley root when influenced by NaCl is still citing by the research scientists throughout world, implying the quality of work implemented in this Institute.
After returning home, I was able to find research fund based on the papers published with Prof. Matsumoto and to establish my lab to work on the effect of low temperature on the performance of cucumber plasma membrane ATPase activity, a training that was done in this Institute. From then on, so called “Agricultural Plant Stress Research Center” was established in our University. The Center is financially supported by the Ministry of Science and Technology for 9 years.
I have been honored by the invitation of this Institute twenty years later of my first arrival to Kurashiki in 1987 and, therefore, felt like I was home all the time. Water transport protein, aquaporins, has been a common title this time with Dr. Katsuhara and his group. A turning point was that low temperature induced water stress at least in the beginning, a common phenomenon that could be seen also by salt stress, a research topic covered by Dr. Katsuhara in this Institute. During my stay, we have been able to find very good reasons why we should continue to cooperate in the future until my retirement after 5 years. We need considerable effort to make firm conclusions on the mechanism involved in salt sensitivity or tolerance in barley varieties but we feel that we are making already some progress. In addition to aquaporin business, we also shared common interest in hydrogen peroxide transport through aquaporins, a topic that has not been covered by scientists very much until now.
Before leaving the city of Kurashiki, I would like to express sincere thanks to Professor Takeda, Dr. Shibasaka and other members in Dr. Katsuhara’s lab. In addition, all the staff members who visited our Center in Korea have been very helpful during my stay. Hopefully, I will be able to visit again twenty years later!

(Professor and Director, Agricultural Plant Stress Research Center, Division of Plant Biotechnology, College of Agriculture and Life Sciences, Chonnam National University, Gwangju 500-757, Korea)
 
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by Dr. Qian Qian


First, I would like to express my deepest gratitude to Professor Maekawa and the Research Institute for Bioresources, Okayama University for inviting me as a Visit Professor, which made me spend an unforgettable half year from 18th Apr to 30th Sep2007 here.
Through participating the research, I have learned more about the mechanism of nDart transposon, which Professor Maekawa developed in past 20 years, and realized that it is a highly efficient system for mutation and gene cloning in rice. Moreover, this system can be used to clone QTLs for important agronomic traits. The broad utility of nDart will accelerate the research on rice genetics. After discussion with Maekawa Sensi, we initiated together to transfer nDart transposon into the indica variety "93-11". The important QTLs in "93-11" will be cloned based on the nDart tranposon mutant population. This exciting work will facilitate the whole genome molecular breeding in rice. What let me very happy is that my application for a major International Cooperation Project from China National Science Foundation has been granted resulting from the collaborating with Maekawa Sensi.
The Research Institute for Bioresources, Okayama University is an important international institute with long history, very good facilities, service systems, and diligent and serious-minded scientists. I knew the studies on barley germplasm resources in this institute even when I was a student. I hope scientists in this field will reinforce the collaboration and keep advanced status in this field in the world.
As I know, only in China, a lot of colleagues who have visited and studied in this institute have been outstanding scientists. To this institute, they are also precious treasures. I hope this institute will provide more grant to talented students abroad.
At last I would like to say that all colleges here are always welcome in Hangzhou, China . Please feel free to contact me when you want to visit China.
Thank you!
Qian Qian
(China National Rice Research Institute)

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 § Topics at RIB §
 Message from Emeritus Professor Toshihiko Maitani on the occasion of his retirement

After having retired from Okayama University on March 31, 2007, I am now Emeritus Professor and I mainly live in my home town (Mitoyo city) of Kagawa Prefecture, working in the fields on fine days and reading books on rainy days. In 1971, I came to this Institute from Kyoto University to work as a research associate of the Laboratory of Micrometeorology. At that time, Dr. Kenichi Takasu was the Professor, Dr. Takuro Seo was the Associate Professor and Dr. Kazuyoshi Kimura was another research associate. My first research topic here was on micrometeorology in crop fields. In the 1970s, experimental data on basic turbulence statistics was still insufficient. My major research on this topic was to understand the turbulence structure in crop fields, using several sonic anemometer thermometers. A series of experiments were made over some plant canopies such as wheat, rush and rice from 1974 to 1977. The acquisition and analysis of the observational data were made by an offline data acquisition system for micrometeorological observation. The observational results were generally consistent with the results obtained by other investigators over plant canopies, but we found some peculiar phenomena such as downward turbulent energy flux. I studied Honami phenomena and mechanism of downward flux of turbulent kinetic energy in the surface layer near plant canopies. I also conducted experiments on a wheat field and a rush field, in order to investigate the interaction between vegetation and surface winds. In the 1970s-1980s , turbulent transport processes of many quantities such as momentum, sensible heat, water vapor, vorticity and carbon dioxide were studied just above plant canopies and sometimes within plant canopies. In the 1990s and 2000s, our research topics shifted to studies on plant response to meteorological stresses such as drought and high temperature. In order to protect and preserve each ecosystem or wild plants, we also made meteorological observations in Rasyomon doline, Shimotaisyaku valley,and Miyoshi basin in Chugoku districts. We continued measurement of suspended particulate matter (SPM) for more than 20 years, using the Andersen Instruments eight stage, multi-orifice sampler. The relationship between dust storm activities in the north of China and yellow sands phenomena or SPM concentration in Okayama was investigated. Throughout my whole research period, we made many experiments with many researchers in Japan and several foreign countries (USA, Canada, China and Australia). Especially, as foreign Prof. Roger Shaw and Prof. Jiemin Wang collaborated with us as foreign visiting professors for a long time. Finally, I would like to express my sincere thanks to all staff members, students and collaborators for their kindness and friendship. I wish for the successful future development of the Institute. Yours sincerely, Toshihiko Maitani.
(Emeritus Professor Toshihiko Maitani. August 2007)

 
 § Research activities at RIB §    
 Congratulations on awards
2005

Professor J. F. Ma: Japan Academy Medal. 2005
" Studies on Tolerance Mechamisms of Mineral Stresses in Higher Plants"
Professor J. F. Ma: JSPS Prize. 2005
" Studies on Tolerance Mechamisms of Mineral Stresses in Higher Plants"
2007
Professor J. F. Ma: The 52th Japanese Society of Soil Science and Plant Nutrition Awards for 2007
“Studies on Beneficial Effects and Uptake System of Silicon in Rice”
 
 Symposia Held

The 22nd RIB International Symposium “RNA silencing: Principles and practice”
This symposium was held on November 18, 2005 at the Okayama University 50th Anniversary Hall. Eight scientists presented their recent topics on basic and applicable work, and then held a discussion with the other participants.
 Topics;
“Introduction to RNA silencing”
Hideki Kondo, Okayama University (Japan)
“Molecular and genetic dissection of RNA silencing machineries”
Carlo Cogoni, Universita degli Studi di Roma (Italy)
“RNA-directed DNA methylation”
Michael Wassenegger, AlPlanta-Institute for Plant Research (Germany)
“RNA silencing suppressors of animal and plant viruses”
Shou-Wei Ding, University of California, Riverside (USA)
“Maturation process and function of microRNA in plants”
Yuichiro Watanabe, University of Tokyo (Japan))
“RNA silencing-mediated resistance against Beet necrotic yellow vein virus”
Tetsuo Tamada, Okayama University (Japan)
“RNA silencing technology in crop science”
Min-Bo Wang, CSIRO Plant Industry (Australia)
Organizer; Prof. Nobuhiro Suzuki
 
Drooping cherry blossoms of
our institute (Apr.5, 2007)

 This symposium was supported financially by the Ohara Foundation for Agricultural Sciences.
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The 23nd RIB Symposium "Global Warming and Building Greening"
This symposium was held on December 2, 2006 at the Kurashiki City Geibunkan Ai-theater. We overviewed the role, a social meaning, the current state, and the perspective of greening on the rooftop, the building, and the artificial ground in this symposium, including the relation between Global warming and the heat island phenomenon. It aims at the problem institution, the overall discussion and understanding.
Topics;
“ From rooftop greening to the greening construction - Perspective of greening business and study –“
Mitsuo Kondo (Tokyo University of Agriculture, Faculty of Regional Environment Science)
“ The present situations and mechanism of city warming”
Fumiaki Fujibe (Japan Meteorological Agency, Meteorological Research Institute)
“School eco-repair and environmental education”
Yashuyuki Ozaki (Ministry of the Environment, Environmental Policy Bureau)
“Approach of rooftop greening in Shimane University with aquatic eco-systems”
Morihiro Aizaki (Shimane University, Faculty of Life and Environmental Science)
“Technology of rooftop greening using symbiotic microorganisms”
Toshihiro Kurusu (The General Environmental Technos Co Ltd)
”Development of materials of greening in rooftop”
Kazunori Fujii (Minoru Industrial Co., Ltd)
”Outline and progress report of greening project in RIB”
Toshihiko Maitani (Okayama University, RIB)
Organizer; RIB greening project team (RIB Okayama University)
This symposium was supported financially by the Ohara Foundation for Agricultural Sciences.
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International Workshop on COE Program of Okayama Univercity
October 2, 2006, Okayama University 50th Anniversary Hall
Title: Construction of Monitoring Systems for Global Environment by Bioresources
and their Application for Environmental Safeguard
Organizers: Kazuhide Kimbara (Okayama University, RIB)
1. Research progress of the COE project
Project members (RIB, Okayama University)
2. Detection and assessment of physiological activity of bacteria in soil
Kazuhide Kimbara (RIB, Okayama University)
3. Genomic insights into the potent pollutant-degrading abilities of a soil bacterium
Lindsay Eltis (Professor, University of British Columbia)
4. Monitoring the trends of organic and inorganic contaminants using Rothamsted long-term experiments
Fangjie Zhao (Principal Research Scientist, Rothamsted Research))
5. Molecular markers from wolf spider for the risk assessment of heavy metal exposure
Si Hyeock Lee (Associate Professor, Seoul National University)
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The Symposia in the 47th Annual Meeting of the Japanese Society of Plant Physiologist
March 19th, 2006, Tsukuba University
Title: Functions of Barley Genome: from Genes, Plants to Beer
Organizers: Maki Katsuhara, Kazuhiro Sato (Okayama University, RIB)
1. Development and application of genome resources
Kazuhiro Sato (Research Institute for Bioresources, Okayama University)
2. Positional cloning systems in barley
Takao Komatsuda (National Institute of Agrobiological Sciences)
3. Toward improving fusarium head blight resistance
Kiyosumi Hori (Research Institute for Bioresources, Okayama University)
4. Regulation of barley gene expression under water-related stresses
Maki Katsuhara, Manabu Sugimoto (Research Institute for Bioresources, Okayama University)
5. Characterization of barley enzymes involved in the lipid oxidation and the flavor stability of beer.
Hisao Kuroda (Frontier Laboratories of Value Creation, SAPPORO BREWERIES LTD.)
6. Tolerance mechanisms of mineral stress in barley
Jian Feng Ma (Research Institute for Bioresources, Okayama University)
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Symposium on “Microorganisms Living in the Underground World’
At 2006 Annual Meeting of Japan Society for Bioscience, Biotechnology, and Agrochemistry
(Kyoto Women’s University) on March 28, 2006
Organizer: Fusako Kawai (RIB, Okayama University), Furukawa (Kyushu University)
1. Microorganisms involved in formation of soil spheres
Kazuyuki Inubushi (Fac. Horticulture, Chiba Univ., Japan)
2. Microorganisms supporting plants in rihizospheres
Tatsuhiro Ezawa (Grad. Sch. Agr., Hokkaido Univ., Japan)
3. Microorganisms tolerant to low pH and high Al concentrations
Fusako Kawai, Akio Tani and Yoriko Shimizu (Res. Inst. Biores., Okayama Univ., Japan)
4. Investigation of lifestyle of bacteria in soil
Yumi Shimomura1, Rhyzo Ohno1 and Kazuhide Kimbara2 (1Tkyo Inst. Tech. and 2Okayama Univ., Japan)
5. Bacteria involved in chloroethene respiration in the environment
Masatoshi Goto, Yasumoto Futakami and Kensuke Furukawa (Grad. Sch. Agr., Kyushu Univ., Japan)
6. Newest microbial features in the lithosphere
Ken Takai (JAMSTEC, Japan)
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Workshop on Silicon in Plants
At Kurashiki Gebunkan Hall on May 25th, 2006
Organizer: Jian Feng MA (RIB, Okayama University)
1.Datnoff, L. (Univ. Florida)
The effect of silicon on components of host plant resistance
2. Rodrigues, F. (Vicosa Fed. Univ.)
Silicon-mediated resistance in monocots: the rice-Magnaporthe grisea model
3. Kanto, T. (Hyogo Pref. Tech. Center Agri.)
Effect of soluble silicon on the plant-microbe interaction (strawberry and powdery mildew fungus)
4. Iwasaki, K. (Kochi Univ.)
Effect of silicon fertilization on the production of nasunin, an anthocyanin in eggplant peels
5. Hattori, T. (Tottori Uni.)
Effect of silicon application on water relation of sorghum under osmotic stress
6. Kinrade, S. (Lakehead Univ.)
Effect of silicon on primary cell wall structure
7.Yokoyama, T. (Kyushu Univ.)
Specific concentration and deposition of silicic acid in rice plant
8. Kindomihou, V. (Abomey Calavi Uiv.)
Relationships between silica concentration and other leaf traits in tropical fodder grass species
8. Abe, J. (Univ. Tokyo)
Silicon deposition in leaf and root of four forage grass species
9. Belanger, R. (Univ. Laval)
Can transcriptome analysis explain the role of silicon in plant biology?
10. Tamai, K. (Okayama Univ.)
Isolation and characterization of a rice mutant with low Si and cloning of the responsible gene
11. Yamaji, N. (Okayama Univ.)
Spatial distribution and temporal variation of rice Si transporter Lsi1
12. Mitani, N. (Okayama Univ.)
Functional analysis of rice silicon transporter Lsi1
13. Fujiwara, T. (Univ. Tokyo)
Boron transporters: their regulation and application for growth improvement
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ICEM2006 in Yamaguchi “Management of Sustainability and Ecological Modeling”
At Faculty of Medicine, University of Yamaguchi, Ube, Yamaguchi, Japan
Conference Chair: Masao Ukita (Yamaguchi University, Japan)
International Advisory Committee: Isao Aoyama (Okayama University, Japan) etc.
1. Organized Sessions
2. Modelling for ecosystem management
Use of ecological modelling as a tool for managing ecosystem
3. Ecological modelling techniques
Presentation of new techniques in ecological modeling
4. Modelling growth and development processes in ecosystems
Use of ecological modelling as a tool for understanding ecosystem
5. Modelling different types of ecosystems
Application of ecological models to various types of ecosystems,
such as forest ecosystems, aquatic ecosystems, grassland ecosystems, agricultural ecosystems, etc.
6. Modelling catastrophic changes in the environment:
Models concerning the spread of invasive species, extinction, eco-toxicology, outbreaks etc.
7. Other topics related to ecological modelling
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Symposium on “Comprehensive Analyses of Microbial Strategy and Evolution for Biodegradation of Xenobiotic Polymers Based on Polymer Science, Microbiology and Mathematics”
At 58th Annual Meeting of The Society for Biotechnology, Japan (Osaka Univ.) on September 13, 2006
Organizer: F. Kawai (RIB, Okayama University), Yutaka Tokiwa (AIST)
1. Controlling of biodegradability for microbial polyesters
T. Iwata (Polymer Chem. Lab., RIKEN, Japan)
2. Crystal structure of a fungal PHB depolymerase
T. Hisano (Spring-8 Center, RIKEN Harima Inst., Japan)
3. Biodegradation of plastics and microbial diversity in soil environment-new degrading genes and their applications
T. Nakajima (Grad. Sch. Life Env. Sci., Univ. Tsukuba, Japan)
4. Biodegradable plastic-degrading microorganisms and natural polymers
Yutaka Tokiwa (AIST, Japan)
5. Purification, characterization, gene cloning and molecular characterization of extracellular poly(L-lactic acid) depolymerases from Amycolatopsis sp. strain K104-1
N. Abe, H. Tamakawa, E. Matsuda and Y. Kamio (Grad. Sch. Agric. Sci., Tohoku Univ., Japan)
6. Conservation and transcriptional regulation of polyethylene glycl-degradative operon In Sphingomonads
A.Tani, J. Charoenpanich, K. Kimbara and F. Kawai (Res. Inst. Biores., Okayama Univ., Japan)
7. Studies on mathematical models for depolymerization of polymers and their applicabilit
Y. Watanabe and F. Kawai (Grad. Sch. Environ. Sci., Res. Inst. Biores., Okayama Univ., Japan)
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Okayama ESD International Conference 2006 “Towards realizing a sustainable society”
At Okayama University 50th Anniversary Hall and Graduate school of natural sciences building conference room (Okayama City) on October 12th-15th, 2006
Conference Chair: Isao Aoyama (Okayama University)
1. Opening
Okayama Univerisity, Okayama city and UNESCO
2. Education for International Understanding
Chair: Toru Okigaki (The Okayama Prefectural International Exchange Foundation)
3. Education and Disaster Preparedness
Chair: Hideki Yamamoto, Kenji Okubo (Okayama University)
4. Environmental Education
Chair: Yusaku Nogami (Okayama University of Science)
5. RCE conference
Chair: Katsunori Suzuki (United Nations University Institute of Advanced Studies)
6. Plenary Lecures
Hans van Ginkel (the Rector of the United Nations University)
7. Panel Discussion
Chair: Isao Aoyama
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The 49th Symposium of Japanese Society of Breeding “Triticeae Breeding – Prospects and Problems”
At Yamagata University on September 22, 2007
Organizers: Taihachi Kawahara (Kyoto University), Kazuhiro Sato (Okayama University)
 1. Prospects of barley breeding with DNA markers
  K. Sato (RIB, Okayama University)
2. Evolutional process at domestication genes in barley
  T. Komatsuda (National Institute of Agrobiological Sciences)
3. Classification and phylogeny of wheat and its relatives
  T. Kawahara (Grad. School Agric., Kyoto University)
4. Interspecific variation of a wild progenitor, Aegilops
 tauschii, and its application to wheat breeding
  S. Takumi (Grad. School Agric., Kobe University)
5. Potential for wide hybridization in wheat using Triticeae  
 genepool
  H. Tsujimoto (Fac. Agr., Tottori University)
 
Barley field covered with snow
(Feb.6, 2006)
  
 § Welcome and farewell §
 Welcome 

Year

Name

Group

Term

2006 Jun Yamashita (Assistant Prof.) Group of Barley and Wild Plant Resources Apr. 1 2006-
Naoki Yamaji (Assistant Prof.) Group of Physiology and Molecular Biology of Plant Stress Responses Sep. 1 2006-
 
 Farewell

Year

Name

Group

Term

2006

Masayoshi ASATANI (Assistant Prof.)

Group of Plant-Microbe Interactions

-Mar. 31 2006

 

2007

Toshihiko MAITANI (Prof.)

Group of Meteorological Ecology

-Mar. 31 2007
 Tetsuo TAMADA (Prof.)  Group of Plant-Microbe Interactions  -Mar. 31 2007
 
 § About our foundation §
 The Ohara Foundation for Agricultural Science chaired by Mr. Ken-ichiro Ohara acts support our institute financially and contributes to the advancement of agricultural science. The activity of the foundation is to assist our research projects, sponsor our symposium and publications including this newsletter, and support mutual research exchange programs abroad. We are grateful to it.
 
  Night view of Kurashiki Bikan-Chiku (Mar.21, 2006)

 

 Newsletter of 2005
 NewsLetter of  2005 
 NewsLetter of  2005(PDFversion)