publications 2009
Journal


2012

Tani A, Sahin N, Kimbara K
Methylobacterium gnaphalii sp. nov. isolated from leaves of Gnaphalium spicatum.
Int J. Syst Evol Microbiol 2011 in press.

2011
Tani A, Sahin N, Kimbara K
Methylobacterium oxalidis sp. nov. isolated from leaves of Oxalis corniculata.
Int J. Syst Evol Microbiol 2011 in press.

Sahin N, Tani A, Kotan R, Sedlacek I, Kimbara K, Tamer AU.
Pandoraea oxalativorans sp. nov., Pandoraea faecigallinarum sp. nov. and Pandoraea vervacti sp. nov., isolated from oxalate-enriched culture.
Int. J. Syst. Evol. Microbiol. 61, 2247-2253, 2011.

Tani A, Tanaka A, Minami T, Kimbara K, Kawai F,
Characterization of a cryptic plasmid, pSM103mini from polyethylene-glycol degrading Sphingopyxis macrogoltabida strain 103.
Biosci Biotechnol Biochem 75, 295-298, 2011.

Tani A., Akita M., Murase H., Kimara K.,
Culturable bacteria in hydroponic cultures of moss Racomitrium japonicum and their potential as biofertilizers for moss production,
J. Biosci. Biotechnol.,112, 32-39, 2011.

Chiba S, Kondo H, Tani A., Saisho D, Sakamoto W, Kanematsu S, Suzuki N
Widespread endogenization of genome sequences of non-retroviral RNA viruses into plant genomes.
PLos Pathog 7 e1002146, 2011

Hwanhlem N., Buradaleng S., Wattanachant S., Benjakul S., Tani A., Maneerat S.
, Isolation and screening of lactic acid bacteria from Thai traditional fermented fish (Plasom) and production of Plasom from selected strains
Food Control 22, 401-407, 2011


2010

Tani, A., Kawahara, T., Yamamoto Y., Kimbara, K., Kawai., F.,
Genes involved in novel adaptive aluminum resistance in Rhodotorula glutinis
J Biosci. Bioeng., 109, 453-458 (2010)

谷 明生、MALDI-TOF/MSを利用した新しい菌株同定技術とその応用 (迅速・簡単が魅力。従来の分類指標との相関は?)
化学と生物48, 598-601 (2010)

NEWTON 2010 3月号 P4
積水化学工業株式会社 自然に学ぶものづくり 第69
共生微生物に学ぶ植物生育促進剤の開発

Iijima, S., Shimomura, Y., Haba, Y., Kawai, F., Tani, A., Kimbara, K.
Flow cytometry-based method for isolating live bacteria with meta-cleavage activity on dihydroxy compounds of biphenyl
J Biosci. Bioeng., 109, 645-651(2010)

Charoenpanich J., Tani A., Kawai F.
Identification of the PEG-induced proteins by 2D-gel electrophoresis and mass spectrometry in Sphingopyxis macrogoltabida strain 103
CMU J Nat Sci 9, 111-124 (2010)

Arias-Barreiro C.R., Okazaki K., Koutsaftis A., Inayat-Hussain S.H., Tani A., Katsuhara M., Kimbara K., Mori I.C.
A bacterial biosensor for oxidative stress using constitutively expressed redox-sensitive protein roGFP2.
Sensors 10, 6290-6306 (2010)

Zhang X., Tani A., Kawai F., Kimbara K.
Rapid and multiple in situ identification and analyses of physiological status of specific bacteria based on fluorescent in situ hybridization.
J Biosci Bioeng. 110, 716-719, 2010

Matsufuji Y., Nakagawa T., Fujimura S., Tani A., Nakagawa J.
Transcriptional regulation of the genes involved in the pentose phosphate pathway and the glycolysis mediated by Stb5p is essential for acetaldehyde tolerance in Saccharomyces cerevisiae
J. Basic Microbiol. 50,494-498 (2010)

Bacterial topics on polycyclic aromatic hydrocarbons and polychlorinated biphenyls: Biosensing, bioremediation and physiological implications
Arias-Barreiro C. R., Iijima S., Kimbara K., Mori I. C.

Determination of Cu(II) toxicity using a biosensor with immobilized recombinant Escherichia coli roGFP cells.
Dedi Futra, Salmijah Surif, Asmat Ahmad, Wong Kok Kee, Izumi C. Mori, Carlos Raul Arias-Barreiro and Lee Yook Heng

Impact of heavy metal contamination on crops and risk management Carlos R. Arias-Barreiro and Izumi C. Mori

Environmental Risk Assessment and management in Japan and Malaysia: Potential tools for better environmental protection, in: Morisawa S. and Mokhtar M. B. (Ed.), Published by Graduate School of Engineering, Kyoto University, Kyoto and Institute for Environment and Development, University Kebangsaan Malaysia, Selangor, 2010, pp. 39-56 (2010).


2009

Musikasang H., Tani A., H-kitikun A., Maneerat S., Probiotic potential of lactic acid bacteria isolated from gastrointestinal digestive tract, World J. Microbiol. Biotechnol., 25, 1337-1345, (2009)

Biomarkers of green roof vegetation: anthocyanin and chlorophyll as stress marker pigments for plant stresses of roof environments.
Mori, I.C., Utsugi, S., Tanakamaru, S., Tani, A., Enomoto, T. & Katsuhara, M.,
J. Environ. Eng. Manage., 19, 21-27 (2009)

谷 明生、MALDIで見える微生物の多様性、生物工学会誌 バイオメディア
2009年3月号 vol 87 (3) p137, 2009

岡山大広報誌 いちょう並木 谷明生、「屋上緑化、スナゴケ、そして微生物」

特殊環境微生物の発見
合同出版、惣田c夫、河合富佐子編
p107 第5章 耐酸性菌・好酸性菌について 金原和秀
2009年1月

2008

Racomitrium canescens as a material for greening and physiological study.
M. Akita, H. Murase, A.Tani, M. Lehtonen and J.P.T Valkonen
Physiologia Plantarum, 133(2), M8-3, 2008

Involvement of PEG-carboxylate dehydrogenase and glutathione S-transferase in PEG metabolism by Sphingopyxis macrogoltabida strain 103
Somyoonsap, P., Tani, A., Jittima, C., Minami, T., Kimbara, K., & Kawai, F.
Appl. Microbiol. Biotechnol. 81(3) 473-484 (2008)

The crucial role of mitochondrial regulation in adaptive aluminum resistance in Rhodotorula glutinis.
Tani, A., Inoue, C., Tanaka, Y., Yamamoto, Y., Kondo, H., Hiradate, S., Kimbara, K., & Kawai, F.
Microbiology, 154, 3437-3446 (2008)

Proposed Oxidative Metabolic Pathway for Polypropylene Glycol in Sphingobium sp. Strain PW-1.
Hu, X., Liu, X., Tani, A., Kimbara, K. & Kawai, F.
Biosci Biotechnol Biochem, 72, 1115-1118 (2008)

The pva operon is located on the megaplasmid of Sphingopyxis sp. strain 113P3 and is constitutively expressed, although expression is enhanced by PVA.
Hu, X., Mamoto, R., Fujioka, Y., Tani, A., Kimbara, K. & Kawai, F.
Appl Microbiol Biotechnol. 78, 685-693. (2008)

Polyethylene glycol (PEG)-carboxylate-CoA synthetase is involved in PEG metabolism in Sphingopyxis macrogoltabida strain 103,
Akio TANI, Peechapack SOMYOONSAP, Toshiyuki MINAMI, Kazuhide KIMBARA, Fusako KAWAI.
Arch. Microbiol. 189, 407-410. (2008)

2007

Sphingopyxis属細菌によるポリエチレングリコール(PEG)分解機構
谷 明生, 河合 富佐子
生物工学会誌.2007 Vol 85 (6) : 267-269

Structure and conservation of polyethylene glycol-degradative operon in Sphingomonas species
Tani A, Charoenpanich J, Mori T, Takeichi M, Kimbara K, Kawai F
Microbiology.2007 Feb;153(Pt 2):338-46

Xenoestrogenic short ethoxy chain nonylphenol is oxidized by a flavoprotein alcohol dehydrogenase from Ensifer sp. strain AS08
Liu X, Tani A, Kimbara K, Kawai F
Appl. Microbiol. Biotechnol. 2007 Jan; 73(6):1414-22.

Isolation of bacteria able to grow on both polyethylene glycol (PEG) and polypropylene glycol (PPG) and their PEG/PPG dehydrogenases.
Hu X, Fukutani A, Liu X, Kimbara K, Kawai F.
Appl. Microbiol. Biotechnol. 2007 Jan; 73(6):1407-13.

2006

Oxidative stress by biphenyl metabolites induces inhibition of bacterial cell separation.
Yamada T, Shimomura Y, Hiraoka Y, Kimbara K
Appl Microbiol Biotechnol. 2006 Nov; 73(2):452-7

Dual regulation of a polyethylene glycol degradative operon by AraC-type and GalR-type regulators in Sphingopyxis macrogoltabida strain 103.
Charoenpanich J, Tani A, Moriwaki N, Kimbara K, Kawai F
Microbiology. 2006 Oct;152(Pt 10):3025-34.

Metabolic pathway of xenoestrogenic short ethoxy chain-nonylphenol to nonylphenol by aerobic bacteria, Ensifer sp. strain AS08 and Pseudomonas sp. strain AS90.
Liu X, Tani A, Kimbara K, Kawai F
Appl Microbiol Biotechnol. 2006 Sep;72(3):552-9. Epub 2006 Mar 10.

Myroides pelagicus sp. nov., isolated from seawater in Thailand.
Yoon J, Maneerat S, Kawai F, Yokota A
Int J Syst Evol Microbiol. 2006 Aug;56(Pt 8):1917-20.

Method for assessment of viability and morphological changes of bacteria in the early stage of colony formation on a simulated natural environment.
Shimomura Y, Ohno R, Kawai F, Kimbara K
Appl Environ Microbiol. 2006 Jul;72(7):5037-42.

Cloning and expression of the gene for periplasmic poly(vinyl alcohol) dehydrogenase from Sphingomonas sp. strain 113P3, a novel-type quinohaemoprotein alcohol dehydrogenase.
Hirota-Mamoto R, Nagai R, Tachibana S, Yasuda M, Tani A, Kimbara K, Kawai F
Microbiology. 2006 Jul;152(Pt 7):1941-9.

Analysis of amino acid residues involved in catalysis of polyethylene glycol dehydrogenase from Sphingopyxis terrae, using three-dimensional molecular modeling-based kinetic characterization of mutants.
Ohta T, Kawabata T, Nishikawa K, Tani A, Kimbara K, Kawai F
Appl Environ Microbiol. 2006 Jun;72(6):4388-96.

2005

Biochemical and molecular characterization of a periplasmic hydrolase for oxidized polyvinyl alcohol from Sphingomonas sp. strain 113P3.
Klomklang, W., Tani, A., Kimbara, K., Mamoto, R., Ueda, T., Shimao, M. and Kawai, F.
Microbiology 151: 1255-62, 2005.

Bile acids are new products of a marine bacterium, Myroides sp. strain SM1
Maneerat, S., Nitoda, T., Kanzaki, H. and Kawai, F.
Appl. Microbial. Biotechnol., 67: 679-683, 2005.

A novel nicotinoprotein aldehyde dehydrogenase involved in polyethylene glycol degradation.
Ohta, T., Tani, A., Kimbara, K. and Kawai, F.
Appl. Microbial. Biotechnol., 68: 639-646, 2005.

A novel crude oil-emulsifier excreted in the culture supernatant of a marine bacterium, Myroides sp. strain SM1.
Maneerat, S., Banba, T., Harada, K., Kobayashi, A., Yamada, H. and Kawai, F.
Appl. Microbial. Biotechnol., July 30, online publication, 2005.

Determination of nonylphenol and short ethoxy chain nonylphenols on a normal phase silica-gel column high performance liquid chromatography.
Xin, R., Tani, A. and Kawai, F.
Chinese Journal of Analytical Chemistry, 33: 1189-1191, 2005.

Numerical simulation of microbial depolymerization process of exogenoustype.
Watanabe, M. and Kawai, F.
ANZIAN J., C1188-C1204, 2005.

Recent Developments in the Study of Microbial Aerobic Degradation of Polychlorinated Biphenyls.
Kimbara, K.
Microbes and Environments, 20: 127-134, 2005.

bph genes of the thermophilic PCB degrader, Bacillus sp. JF8: characterization of the divergent ring-hydroxylating dioxygenase and hydrolase genes upstream of the Mn-dependent BphC.
Mukerjee-Dhar, G., Shimura, M., Miyazawa, D., Kimbara, K. and Hatta, T.
Microbiology, 151: 4139-4151, 2005.

教科書の常識を変える細菌,Myroides 属,化学と生物,43: 493-494, 2005.
河合富佐子,S. Maneerat.

Analytical and experimental studies on microbial depolymerization of xenobiotic polymers, In “Leading edge plymer research” Bregg, R. K. (ed.), Nova Publications, Inc. Nr, pp.223-250, 2005.
Watanabe, M. and Kawai, F.


Organization and expression of the genes involved in the metabolism of polyethylene glycol and polyvinyl alcohol, In “Degradable polymers and materials” Scholz, C. C. and Khemani, K. (eds.), ACS, in press. 2005.
Kawai, F., Tani, A. and Kimbara, K.

ポリエーテル,「エコマテリアルハンドブック」,丸善,印刷, 4-3-3-1
河合富佐子.


A. Tani, T. Kawahara, Y. Yamamoto, K. Kimbara, F. Kawai
Adaptive Al-resistance in Rhodotorula glutinis IFO1125.
Yeast 22 (S1), S94 2005

2004


Bile Acids are new products of a marine bacterium, Myroides sp. strain SM1
Maneerat S, Nitoda T, Kanzaki H and Kawai F.
Applied Microbiology and Biotechnology, 2004

Analytical and computational techniques for exogenous depolymerization of xenobiotic polymers
Watanabe M, Kawai F, Shibata M, Yokoyama S, Sudate Y and Hayashi S.
Mathematical Biosciences, 192, 19-37, 2004

数値シミュレーションによるポリエチレングリコール生分解性解析
渡辺、河合
環境制御, 26, 17-22

A New Ether Bond-Splitting Enzyme Found in Gram-Positive Polyethylene Glycol 6000-Utilizing Bacterium, Pseudonocardia sp. strain K1
Yamashita M, Tani A and Kawai F.
Appl. Microbiol. Biotechnol., 66, 174-179, 2004

Cloning and Expression of an Ether-Bond-Cleaving Enzyme Involved in the Metabolism of Polyethylene Glycol
Yamashita M, Tani A and Kawai F.
Journal of Bioscience and Bioengineering, 98, 313-315, 2004

Comparative study on biodegradability of polyethylene wax by bacteria and fungi
Fusako Kawai, Masaji Watanabe, Masaru Shibata, Shigeo Yokoyama, Yasuhiro Sudate and Shizue Hayashi
Polym. Degr. Stabil., 86, 105-114 (2004)

Treatment of the yeast Rhodotorula glutinis with AlCl(3) leads to adaptive acquirement of heritable aluminum resistance
A. Tani, D. Zhang, J.A. Duine, and F. Kawai
Appl Microbiol Biotechnol., 65, 344-348, 2004

Genes for Mn(II)-dependent NahC and Fe(II)-dependent NahH located in close proximity in the thermophilic naphthalene and PCB degrader, Bacillus sp. JF8: cloning and characterization
Miyazawa, D., Mukerjee-Dhar, G., Shimura, M., Hatta T., and Kimbara, K
Microbiology, 150, 993-1004, 2004

Apoptosis or growth arrest: Modulation of tumor suppressor p53's specificity by bacterial redox protein azurin
Yamada, T., Hiraoka, Y., Ikehata, M., Kimbara, K., Avner, B. S., Das Gupta, T. K., and Chakrabarty, A.M.
Proc Natl Acad Sci U S A, 101, 4770-4775, 2004

Cloning and characterization of preferentially expressed genes in an aluminum-tolerant mutant derived from Penicillium chrysogenum IFO4626
Manabu Sugimoto, Yushi Saiki, Demin Zhang and Fusako Kawai
FEMS Microbiol. Lett., 15, 137-142, 2004




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