| |
 |
|
  
  |
Publication
2011
Nagaki, K., Shibata, F., Kanatani, A., Kashihara, K. and Murata, M. 2012.
Isolation of centromeric-tandem repetitive DNA sequences by chromatin affinity
purification using a HaloTag7-fused centromere-specific histone H3 in tobacco.
Plant Cell Reports 31: 771-779.
Heckmann, S., Schroeder-Reiter, E., Kumke, K., Ma, L., Nagaki, K., Murata,
M., Wanner, G. and Houben, A. 2011. Holocentric chromosomes of Luzula elegans are characterized by a longitudinal centromere groove, chromosome bending,
and a terminal nucleolus organizer region. Cytogenet. Genome Res. 134(3):220-228.
Nagaki, K., Shibata, F., Suzuki, G., Kanatani, A., Ozaki, S., Hironaka,
A., Kashihara, K. and Murata, M. 2011. Coexistence of NtCENH3 and two retrotransposons
in tobacco centromeres. Chromosome Res. 19(5):591-605.
Ravi, M., Shibata, F., Ramahi, J. S., Nagaki, K.,
Chen, C., Murata, M. and Chan, S. W. 2011. Meiosis-specific loading of the
centromere-specific histone CENH3 in Arabidopsis thaliana. PLoS Genet.
7(6):e1002121.
Houben, A., Kumke, K., Nagaki, K. and Hause, G. 2011. CENH3 distribution and differential
chromatin modifications during pollen development in rye (Secale
cereale L.). Chromosome Res.
19: 471-480.
Tek, A. L., Kashihara, K., Murata, M. and Nagaki,
K. 2011. Functional centromeres in Astragalus sinicus include a compact centromere-specific histone H3 and a 20-bp tandem repeat.
Chromosome Res. 19(8):969-978.
Yokota, E., Shibata, F., Nagaki, K and Murata,
M. 2011. Stability of monocentric and dicentric ring minichromosomes in Arabidopsis. Chromosome Res. 19(8):999-1012.
2010
Nagaki, K., Terada, K., Wakimoto, M., Kashihara, K. and Murata, M. 2010.
Centromere targeting of alien CENH3s in Arabidopsis and tobacco cells. Chromosome Res. 18: 203-211.
Tek, A. L., Kashihara, K., Murata, M. and Nagaki, K. 2010. Functional centromeres in soybean include two distinct tandem repeats and a retrotransposon. Chromosome Res. 18: 337-347.
Yokota, E., Nagaki, K. and Murata, M. 2010. Minichromosome
stability induced by partial genome duplication in Arabidopsis thaliana. Chromosoma 119: 361-369.
2009
Nagaki, K., Walling, J., Hirsch, C., Jiang, J. and Murata, M. 2009. Structure
and evolution of plant centromeres. In: Centromere-Structure and Evolution
(Ed. D. Ugarkovic), Progress in Molecular and Subcellular Biology, Springer-Verlag,
Berlin, Heidelberg, pp.153-179.
Nagaki, K., Kashihara, K. and Murata, M. 2009. A centromeric DNA sequence
colocalized with a centromere-specific histone H3 in tobacco. Chromosoma
118: 249-257.
Nagaki, K., Kashihara, K. and Murata, M. 2009. Characterization of the
two centromeric proteins CENP-C and MIS12 in Nicotiana species. Chromosome Res. 17: 719-726.
Nagaki, K. 2009. Components and structures of plant centromeres. Chromosome
Science 12: 5-11.
Murata, M. and Nagaki, K. 2009. Recent progress in plant artificial chromosomes.
Seibutsu-no-Kagaku Iden 63:61-65.
2008
Murata, M., Yokota, E., Shibata, F., and Kashihara, K. 2008. Functional analysis of the Arabidopsis centromere by T-DNA-induced centromere breakage. Proc. Nat. Sci. Acad.
USA 105:7511-7516.
Cheng, Z. J., Murata, M., Li, X. M., Nian, H., and Wan, J. M. 2008. Effects
on genome constitution and novel cell wall formation caused by the addition
of 5RS rye chromosome to common wheat. J. Integr. Plant Biol. 50:503-509.
2007
Houben, A., Schroeder-Reiter, E., Nagaki, K., Nasuda, S., Wanner, G., Murata, M., and Endo, T. R. 2007. CENH3 interacts with the centromeric retrotransposon cereba and GC-rich satellites and locates to centromeric substructures in barley. Chromosoma 116(3), 275-283.
Nagaki, K. and Murata, M. 2007. Monocentric and holocentric chromosomes in plants. Cytologia 72(4).
2006
Murata, M., Shibata, F., and Yokota, E. 2006. The origin, meiotic behavior
and transmission of a novel minichromosome in Arabidopsis thaliana. Chromosoma. 115(4):311-319.
2005
Ogihara, Y., Yamazaki, Y., Murai, K., Kanno, A., Terachi, T., Shiina, T., Miyashita, N., Nasuda, S., Nakamura, C., Mori, N., Takumi, S., Murata, M., Futo, S., and Tsunewaki, K. 2005. Structural dynamics of cereal mitochondrial genomes as revealed by complete nucleotide sequencing of the wheat mitochondrial genome. Nuc. Acid Res. 33:6235-6250.
Nagaki, K., Kashihara, K., and Murata, M. 2005. Visualization of diffuse
centromeres with centromere-specific histone H3 in the holocentric plant
Luzula nivea. The Plant Cell 17, 1886-1893.
Sato, H., Shibata, F., and Murata, M. 2005. Characterization of a Mis12
homologue in Arabidopsis thaliana. Chromosome Res. 13, 827-834.
Yan, H., Jin, W., Nagaki, K., Tian, S., Ouyang, S., Buell, C. R., Talbert,
P.B., Henikoff, S., and Jiang, J. 2005. Transcription and histone modifications
in the recombination-free region spanning a rice centromere. The Plant
Cell 17, 3227-3238.
Nagaki, K.and Murata, M. 2005. Characterization of CENH3 and centromere
- associated DNA sequences in sugarcane. Chromosome Res. 13, 195-203.
Nagaki, K., Neumann, P., Zhang, D., Ouyang, S. Buell, C. R., Cheng, Z.,
and Jiang, J. 2005. Structure, divergence, and distribution of the CRR
centromeric retrotransposon family in rice. Mol. Biol. and Evol. 22, 845-855.
Tani, A. and Murata, M. 2005. Alternative splicing of Pot1(Protection of
telomere)-like genes in Arabidopsis thaliana. Genes Genet. Syst. 80:41-48.
2004
Nagaki, K. Cheng, Z., Ouyang, S., Talbert, P.B., Kim, M., Jones, K.M.,
Henikoff, S., Buell, C.R. and Jiang, J. 2004. Sequencing of a rice centromere
uncovers active genes. Nat. Genet. 36, 138-145.
Shibata, F. and Murata, M. 2004. Differential localization of
the centromere-specific proteins in the major centromeric satellite of
Arabidopsis thaliana. J. Cell Sci. 117:2963-70.
Ogura, Y., Shibata, F., Sato, H., and Murata, M. 2004. Characterization
of a CENP-C homolog in Arabidopsis thaliana. Genes Genet. Syst. 79:139-144.
Jin, W., Melo, J.R., Nagaki, K., Talbert, P.B., Henikoff, S., Dawe, R.K. and Jiang, J. 2004. Maize centromeres: organization and functional adaptation in the genetic background of oat. The Plant Cell 16: 571-581.
2003
Nagaki, K., Talbert, P.B., Zhong, C.X., Dawe, R.K., Henikoff, S. and Jiang,
J. 2003. Chromatin immunoprecipitation reveals that the 180-bp satellite
repeat is the key functional DNA element of Arabidopsis
thaliana centromeres. Genetics 163, 1221-1225.
Nagaki, K., Song, J., Stupar, R.M., Parokonny, A.S., Yuan, Q., Ouyang,
S., Liu, J., Hsiao, J., Jones, K.M., Dawe, R.K., Buell, C.R. and Jiang,
J. 2003. Molecular and cytological analyses of large tracks of centromeric
DNA reveal the structure and evolutionary dynamics of maize centromeres.
Genetics 163: 759-770.
Taga, M., Tsuchiya, D., and Murata, M. 2003. Dynamic changes of rDNA
condensation state during mitosis in filamentous fungi revealed by fluorescence
in situ hybridization. Mycol. Res. 107: 1012-1020.
Cheng, Z-J. and Murata, M. 2003. A centrometric tandem repeat family originating
from a part of Ty3/gypsy-retroelement in wheat and its
relatives. Genetics 164:665-672.
2002
Murata, M. 2002. Telomeres and centromeres in plants. Current Genomics
3:527-538.
Sakamoto, W., Tamura, T., Hanba-Tomita, Y., Sodmergen and Murata, M. 2002.
The VAR1 locus of Arabidopsis encodes a chloroplastic FtsH and is responsible for leaf variegation in
the mutant alleles. Genes to Cells 7:769-780.
Ogihara, Y., Isono, K., Kojima, T., Endo, A., Hanaoka, M., Shiina, T., Terachi, T., Utsugi, S., Murata, M., Mori, N., Takumi, S., Ikeno, K., Gojobori, Murai, R., Murai, K, T., Matsuoka, Y., Ohnishi, Y., Tajiri, H. and Tsunewaki, K. 2002. Structural features of a wheat plastome as revealed by complete sequencing chloroplast DNA. Mol. Genet. Genomics 266:740-746.
Cheng, Z-J. and Murata, M. 2002. Loss of chromosomes 2R and 5RS in octoploid triticales selected for agronomic traits. Gene Genet. Syst. 77:23-29.
2001
Mimida, N., Goto, K., Kobayashi, Y., Araki, T., Ahn, J. H., Weigel, D.,
Murata, M., Motoyoshi, F. and Sakamoto, W. 2001. Functional divergence
of the TFL1-like gene family in Arabidopsis revealed by characterization
of a novel member, ATC. Genes to Cells 6:327-336.
Sakamoto, W., Ohomori, T., Kageyama, K., Miyazaki, C., Saito, A., Murata,
M., Noda, K.. and Maekawa, M. 2001. The Purple leaf (Pl) locus of rice: the
Plw allele has a complex organization and induces two
genes encoding basic helix-loop-helix proteins involved in anthocyanin
biosynthesis. Plant Cell Physiol. 42:982-991.
2000
Sobir, Ohomori, T., Murata, M. and Motoyoshi, F. 2000. Molecular characterization
of the SCAR markers tightly linked to the Tm-2 locus of
the genus Lycopersicon. Theor. Appl. Genet. 101:64-69.
Tan, S.-H., Nishiguch, M., Murata, M. and Motoyoshi, F. 2000. The
genome structure of kyuri green mottle mosaic virus in comparison with
cucumber green mottle mosaic virus. Arch. Virol. 145:1067-1079.
Ogihara, Y., Isono, K., Kojima, T., Tsuduki, H., Endo, A., Murai, R., Murai,
K, Hanaoka, M., Shiina, T., Terachi, T., Utsugi, S., Murata, M.,
Mori, N., Takumi, S., Ikeno, K., Gojobori, T., Matsuoka, Y., Ohnishi, Y.,
Tajiri, H. and Tsunewaki, K. 2000. Chinese Spring (Triticum aestivum L.) chloroplast genome: Complete sequence and contig
clones. Plant Mol. Biol. Rep. 18:243-253.
Takechi, K., Sodmergen, Murata, M., Motoyoshi, F. and Sakamoto, W. 2000.
The YELLOW VARIEGATED (VAR2)
locus encodes a homologue of FtsH, an ATP-dependent protease in
Arabidopsis. Plant Cell Physiol. 41:1334-1346.
Sakamoto, W., Spielewoy, N., Bonnard, G., Murata, M. and Wintz, H. 2000. Mitochondrial
localization of AtOXA1, an Arabidopsis homologue of yeast Oxa1p involved
in the insertion and assembly of protein complexes in mitochondrial inner
membrane. Plant Cell Physiol. 41:1157-1163.
1999
Heslop-Harrison, J. S., Murata, M., Ogura, Y., Schwarzacher, T. and Motoyosh
i, F. 1999. Polymorphisms and genomic organization of repetitive DNA from
centromeric regions of Arabidopsis chromosomes. The Plant Cell 11:31-42.
Taga, M., Murata, M. and VanEtten, H. D. 1999. Visualization of a conditionally
dispensable (CD) chromosomes in the filamentous ascomycete Nectria haematococca by fuorescence in situ hybridization. Fungal
Genet. Biol. 26:169-177.
Takechi, K., Sakamoto, W., Katsuhara, M., Murata, M. and Motoyoshi, F.
1999. Establishment of in situ
hybridization using Technovit resion in Arabidopsis thaliana. Plant Mol.
Biol. Report. 17:43-51.
Takechi, K., Sakamoto, W., Utsugi, S., Murata, M. and Motoyoshi, F. 1999.
Characterization of a flower-specific gene encoding a putative myrosinase-binding
protein in Arabidopsis thaliana. Plant Cell
Physiol. 40 (12):1287-1296.
Mimida, N., Sakamoto, W., Murata, M. and Motoyoshi, F. 1999. TERMINAL FLOW ER 1-like genes in Brassica
species. Plant Sci. 142:155-162.
Murata, M. 1999. Differential screening of rye-type cDNAs from a common
wheat carrying the rye midget chromosomes. Bull. Res. Inst. Bioresources,
Okayama Univ. 6:53-64.
1998
Ohmori, T., Murata, M. and Motoyoshi, F. 1998. Characterization of disease
resistance gene-like sequences in near-isogenic lines of tomato. Theor.
Appl. Genet. 96:331-338.
Utsugi, S., Sakamoto, W., Murata, M. and Motoyoshi, F. 1998. Arabidopsis thaliana vegetative storage protein (VSP) genes: gene
organization and tissue-specific expression. Plant Mol. Biol. 38:565-576.
Taga, M., Murata, M. and Saitoh, H. 1998. Comparison of different karyotyping
methods in filamentous ascomycetes - a case study of Nectria
haematococca (an amorph: Fusarium solani). Mycol. Res.
102:1355-1364.
1997
Murata, M. and Motoyoshi, F. 1997. Physical mapping of the 5S ribosomal
RNA genes in Arabidopsis thaliana by multi-color fluorescence in situ
hybridization with cosmid clones. Plant J. 12:31-37.
Ohshima, S., Murata, M., Sakamoto, W., Ogura, Y. and Motoyoshi, F. 1997.
Cloning and molecular analysis of the Arabidopsis gene TERMINAL FLOWER 1. Mol. Gen.
Genet. 254:186-194.
Sakamoto, W., Tan, S.-H., Murata, M. and Motoyoshi, F. 1997. An unusual
mitochondrial atp9- rpl16 cotranscript found in the
maternal distorted leaf mutant of Arabidopsis thaliana: implication of
GUG as an initiation codon in plant mitochondria. Plant Cell Physiol.
38(8):975-979.
Tan, S.-H., Nishiguchi, M., Sakamoto, W., Ogura, Y., Murata, M., Ugaki,
M., Tomiyama, M. and Motoyoshi, F. 1997. Molecular analysis of the genome
of an attemuated strain of cucumber green mottle mosaic virus, Ann. Phytopathol.
Soc. Jap. 63:470-474.
1996
Motoyoshi, F., Ohmori, T. and Murata, M. 1996. Molecular characterization
of heterochromatic regions around the Tm-2 locus in chromosome 9 of tomato.
in: J. S. Heslop-Harrison (Ed.), Unifying Plant Genomes, SEB symp. No.50, The
Company of Biologists Ltd., Cambridge, pp.65-70.
Ohmori, T., Murata, M. and Motoyoshi, F. 1996. Molecular characterization
of RAPD and SCAR markers linked to the Tm-1 locus in tomato. Theor. Appl. Genet.
91:307-311.
Sakamoto, W., Kondo, H., Murata, M. and Motoyoshi, F. 1996. Altered mitochondiral
gene expression in maternal distorted leaf mutant of Arabidopsis induced by chloroplast mutator. The Plant Cell 8:1377-1390.
Utsugi, S., Sakamoto, W., Ogura, Y., Murata, M. and Motoyoshi, F. 1996.
Isolation and characterization of cDNA clones corresponding to the genes
expressed preferentially in floral organs of Arabidopisis
thaliana. Plant Mol. Biol. 32:759-765.
1995
Murata, M. and Motoyoshi, F. 1995. Floral chromosomes of Arabidopsis
thaliana for detecting low-copy DNA sequences by fluorescence in situ
hybridization. Chromosoma 104:39-43.
Murata, M. 1995. Molecular structure of a midget chromosome from rye. in:
W. J. Raupp and B. S. Gill (Eds.), Classical and Molecular Cytogenetic
Analysis, Manhattan, Kansas, Kansas Agricult. Exp. St., pp.96-99.
Ohmori, T., Murata, M. and Motoyoshi, F. 1995. Identification of RAPD markers
linked to the ToMV resistance genes Tm-2 and Tm-2a in tomato. Theor. Appl. Genet.
90:307-311.
Ohmori, T., Murata, M. and Motoyoshi, F. 1995. Identification of RAPD markers
linked to the ToMV resistance gene, Tm-1
in tomato. Jpn. J. Genet. 70:179-184.
Sakamoto, W., Murata, M. and Motoyoshi, F. 1995. RNA editing of Arabidopsis mitochondrial atp9
gene and expression of the unedited subunit 9 protein in transgenic plants. In
modification of gene expression and non-Men delian inheritance. (eds.
Ohno, K. and Takaiwa, F.), pp401-407.
1994
Murata, M., Ogura, Y. and Motoyoshi, F. 1994. Centromeric repetitive sequences
in Arabidopsis thaliana. Jpn. J. Genet. 69:361-370.
Taga, M. and Murata, M. 1994. Visualization of mitotic chromosomes in filamentous
fungi by fluorescence staining and fluorescence in situ hybridization. Chromosoma
103:408-413.
|
|
|
Institute of Plant Science and Resources, Okayama University
2-20-1 Chuo, Kurashiki, Okayama 710-0046, Japan
Tel: +81-86-434-XXXX
Fax: +81-86-434-XXXX
|
|
|
